Removes duplicate paired TCRs

By default, paired TCRs are listed in one row in the paired chain data for each pairing algorithm they were called by (either T-SHELL or MAD-HYPE). This means some TCRs are present in two rows, once for each algorithm. This function removes duplicate TCRs and returns a data frame where each TCR pair is found in only one row.

Usage

remove_duplicates(data)

Arguments

data

either a single data frame (paired chain) or a list of data frames

Value

Returns a data frame (or list of data frames, depending on input) of paired TCRs where each TCR is listed only once.

See also

Other data_processing: TIRTL_process(), add_single_chain_data(), clean_pairs(), combine_bulk_and_paired_data(), filter_duplicate_tcrs(), filter_mait(), filter_nonfunctional_TCRs(), filter_short_cdr3s(), filter_v_alleles(), identify_non_functional_seqs(), identify_paired(), make_tcr_schema(), prep_for_tcrdist(), read_external_bulk(), read_external_paired()