Remove duplicate TCRs from a data frame

By default, the TIRTLseq pairing scripts write a "paired" data table that has one row per pair per pairing algorithm (MAD-HYPE or T-SHELL). Thus, any pairs identified by both methods will be found in two rows. This function removes those duplicates.

Usage

filter_duplicate_tcrs(df, verbose = TRUE)

Arguments

df

data frame with paired TCRs

verbose

whether to print number of TCRs removed

See also

Other data_processing: TIRTL_process(), add_single_chain_data(), clean_pairs(), combine_bulk_and_paired_data(), filter_mait(), filter_nonfunctional_TCRs(), filter_short_cdr3s(), filter_v_alleles(), identify_non_functional_seqs(), identify_paired(), make_tcr_schema(), prep_for_tcrdist(), read_external_bulk(), read_external_paired(), remove_duplicates()