![[Experimental]](figures/lifecycle-experimental.svg)
By default, the TIRTLseq pairing scripts write a "paired" data table that has one row
per pair per pairing algorithm (MAD-HYPE or T-SHELL). Thus, any pairs identified by both methods
will be found in two rows. This function removes those duplicates.
Usage
filter_duplicate_tcrs(df, verbose = TRUE)
Arguments
- df
data frame with paired TCRs
- verbose
whether to print number of TCRs removed
See also
Other data_processing:
TIRTL_process(),
add_single_chain_data(),
clean_pairs(),
filter_mait(),
filter_nonfunctional_TCRs(),
filter_short_cdr3s(),
filter_v_alleles(),
identify_non_functional_seqs(),
identify_paired(),
prep_for_tcrdist(),
remove_duplicates()
