Add alpha- and beta-chain read counts and read fractions to the paired TCR data

The add_single_chain_data() function adds read counts and proportions from the single-chain pseudobulk data to the paired data frame for each sample of a dataset.

Usage

add_single_chain_data(data, verbose = TRUE)

Arguments

data

a TIRTLseq dataset created by load_tirtlseq()

Value

A TIRTLseq dataset object where the paired data frames for each sample have added columns for read counts and proportions from the single-chain pseudobulk data.

See also

Other data_processing: TIRTL_process(), clean_pairs(), identify_non_functional_seqs(), identify_paired(), prep_for_tcrdist(), remove_duplicates()

Examples

# example code