Add single-chain read counts/fractions to the paired TCR data

The add_single_chain_data() function adds read counts and proportions from the single-chain pseudobulk data to the paired data frame for each sample of a dataset.

Usage

add_single_chain_data(data, verbose = TRUE)

Arguments

data

a TIRTLseq dataset created by load_tirtlseq()

verbose

(optional) whether to print progress of the function (default is TRUE).

Value

A TIRTLseq dataset object where the paired data frames for each sample have added columns for read counts and proportions from the single-chain pseudobulk data.

See also

Other data_processing: TIRTL_process(), clean_pairs(), filter_duplicate_tcrs(), filter_mait(), filter_nonfunctional_TCRs(), filter_short_cdr3s(), filter_v_alleles(), identify_non_functional_seqs(), identify_paired(), prep_for_tcrdist(), remove_duplicates()