Remove TCRs with unknown V-segments

This function removes TCR pairs with V-segments that are not found in params. This is needed for pre-processing for TCRdist() and is part of prep_for_tcrdist(), which is automatically run during TCRdist().

Usage

filter_v_alleles(df, params = NULL, verbose = TRUE)

Arguments

df

data frame with paired TCRs

params

a table with acceptable V-segments (default is TIRTLtools::params)

verbose

whether to print number of TCRs removed

Value

a paired TCR data frame with TCRs with unknown V-segments removed.

See also

Other data_processing: TIRTL_process(), add_single_chain_data(), clean_pairs(), combine_bulk_and_paired_data(), filter_duplicate_tcrs(), filter_mait(), filter_nonfunctional_TCRs(), filter_short_cdr3s(), identify_non_functional_seqs(), identify_paired(), make_tcr_schema(), prep_for_tcrdist(), read_external_bulk(), read_external_paired(), remove_duplicates()