Read and process bulk single-chain TCR-seq data

This function reads and processes bulk single-chain TCR-sequencing data from a non-TIRTLseq assay. Currently, only MiXCR format is supported.

Usage

read_external_bulk(path, format = "MiXCR")

Arguments

path

the path to the data file

format

the data format. Currently only "MiXCR" is supported.

Value

A list containing the following slots:

• df - a data frame with a few columns modified and renamed

• df_raw - the original data, un-modified

Details

Supported data types:

• "MiXCR" - "<sample_name>_TRA.tsv" and "<sample_name>_TRB.tsv"

See also

Other data_import: get_samples(), load_example_data(), load_tirtlseq(), read_external_paired()